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Product Mix
What is X-ray Crystallography ? X-ray crystallography is an experimental technique that exploits the fact that X-rays are diffracted by crystals. It is not an imaging technique. X-rays have the proper wavelength (in th Å t ö (i the Ångström range, ~10-10 m) t be scattered by the electron cloud of an atom of 10 10 ) to b tt d b th l t l d f t f comparable size. Based on the diffraction pattern obtained from X-ray scattering off the periodic assembly of molecules or atoms in the crystal, the electron density can be reconstructed. Additional phase information must be extracted either from the diffraction data or from supplementing diffraction experiments to complete the reconstruction (the p phase problem in crystallography). A model is then progressively built into the p y g p y) p g y experimental electron density, refined against the data and the result is a quite accurate molecular structure. Why Crystallography ? The knowledge of accurate molecular structures is a prerequisite for rational drug design and for structure based functional studies to aid the development of effective therapeutic agents and drugs. Crystallography can reliably provide the answer to many structure related questions, from global folds to atomic details of bonding. In contrast to NMR, which is an indirect spectroscopic method, no size limitation exists for the molecule or complex to be studied. The price for the high accuracy of crystallographic structures is that a good crystal must be found, and that only limited information about the molecule's dynamic behavior is available from one single diffraction experiment.

Outline of the experiment
In a macromolecular X-ray diffraction experiment a small protein crystal is placed into an intense X-ray beam and the diffracted X-rays are collected with an area detector (it is advantageous to cool the crystals to low temperatures, primarily to prevent radiation damage). damage) The diffraction pattern consists of reflections of different

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    (2000) A single adenosine with a neutral pK a in the ribosomal peptidyl transferase center. Science 289, 947–950. 37. Perrotta, A. T., Shih, I.-H., and Been, M. D. (1999) Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme. Science 286, 123– 126. 38. Tanford, C. (1961) Physical Chemistry of Macromolecules. John Wiley and Sons, Inc., New York. 39. Katayanagi, K., Miyagawa, M., Matsushima, M., Ishikawa, M., Kanaya, S., Makamura, H., Ikehara, M., Matsuzaki, T., and Morikawa, K. (1992) Structural details of ribonuclease H from Escherichia coli as refine to an atomic resolution. J. Mol. Biol. 223, 1029–1052. 40. Kokesh, F. C., and Westheimer, F. H. (1971) A reporter group at the active site of acetoacetate decarboxylase. II. Ionization constant of the amino group. J. Am. Chem. Soc. 93, 7270–7274. 41. Frey, P. A., Kokesh, F. C., and Westheimer, F. H. (1971) A reporter group at the active site of acetoacetate decarboxylase. I. Ionization constant of the nitrophenol. J. Am. Chem. Soc. 93, 7266–7269. 42. Stamper, C. G. F., Morollo, A. A., and Ringe, D. (1998) Reaction of alanine racemase with 1-aminoethylphosphonic acid forms a stable external aldimine. Biochemistry 37, 10438–10445. 43. Cleland, W. W., and Kreevoy, M. M. (1994) Low-barrier hydrogen bonds and enzymatic catalysis. Science 264, 1887–1890. 44. Harris, T. K., and Mildvan, A. S. (1999) High-precision measurement of hydrogen bond lengths in proteins by nuclear magnetic resonance methods. Proteins 35, 275–282. 45. Frey, P. A., and Cleland, W. W. (1998) Are there strong hydrogen bonds in aqueous solutions? Bioorg. Chem. 26, 175–192. 46. Cassidy, C. S., Lin, J., and Frey, P. A. (1997) A new concept for the mechanism of action of chymotrypsin: the role of the low-barrier hydrogen bond. Biochemistry 36, 4576–4558. 47. Hayashi, H., Mizuguchi, H., and Kagamiyama, H. (1998) The iminepyridine torsion of the pyridoxal 5 -phosphate Schiff base of aspartate aminotransferase lowers its pK a in the unliganded enzyme and is crucial for the successive increase in the pK a during catalysis. Biochemistry 37, 15076–15085. 48. Wada, A. (1976) The α-helix as an electric macro-dipole. Adv. Biophys. 9, 1–63. 49. Hol, W. G. J., van Duijnen, P. T., and Berendsen, H. J. C. (1978) The α-helix dipole and the properties of proteins. Nature (London) 273, 443–446.…

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